{
  "_id": "6a227d3acd65a98ecbd4fceb",
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  "Type": "Package",
  "Title": "Fit and Compare Species-Area Relationship Models Using\nMultimodel Inference",
  "Version": "2.1.1",
  "Authors@R": "c(person(\"Thomas J.\", \"Matthews\", email = \"txm676@gmail.com\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-7624-244X\")),\nperson(\"Francois\", \"Guilhaumon\", email = \"francois.guilhaumon@ird.fr\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0003-4707-8932\")),\nperson(\"Kevin\", \"Cazelles\", role = c(\"rev\"), comment = c(ORCID = \"0000-0001-6619-9874\")))",
  "Description": "Implements the basic elements of the multi-model inference\nparadigm for up to twenty species-area relationship models\n(SAR), using simple R list-objects and functions, as in\nTriantis et al. 2012 <DOI:10.1111/j.1365-2699.2011.02652.x>.\nThe package is scalable and users can easily create their own\nmodel and data objects. Additional SAR related functions are\nprovided.",
  "License": "GPL-3 | file LICENSE",
  "URL": "https://github.com/txm676/sars",
  "BugReports": "https://github.com/txm676/sars/issues",
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  "Repository": "https://txm676.r-universe.dev",
  "Date/Publication": "2026-01-06 14:27:15 UTC",
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  "Author": "Thomas J. Matthews [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7624-244X>),\nFrancois Guilhaumon [aut] (ORCID:\n<https://orcid.org/0000-0003-4707-8932>),\nKevin Cazelles [rev] (ORCID: <https://orcid.org/0000-0001-6619-9874>)",
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  "_published": "2026-06-05T07:39:38.249Z",
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  "_exports": [
    "coleman",
    "countryside_extrap",
    "display_sars_models",
    "gdm",
    "get_coef",
    "lin_pow",
    "sar_asymp",
    "sar_average",
    "sar_betap",
    "sar_chapman",
    "sar_countryside",
    "sar_epm1",
    "sar_epm2",
    "sar_gompertz",
    "sar_habitat",
    "sar_heleg",
    "sar_koba",
    "sar_linear",
    "sar_loga",
    "sar_logistic",
    "sar_mmf",
    "sar_monod",
    "sar_multi",
    "sar_negexpo",
    "sar_p1",
    "sar_p2",
    "sar_power",
    "sar_powerR",
    "sar_pred",
    "sar_ratio",
    "sar_threshold",
    "sar_weibull3",
    "sar_weibull4",
    "sars_models",
    "threshold_ci"
  ],
  "_datasets": [
    {
      "name": "aegean",
      "title": "A SAR dataset describing invertebrates on islands in the Aegean Sea, Greece",
      "object": "aegean",
      "class": [
        "data.frame"
      ],
      "fields": [
        "a",
        "s"
      ],
      "rows": 90,
      "table": true,
      "tojson": true
    },
    {
      "name": "aegean2",
      "title": "A SAR dataset describing plants on islands in the Aegean Sea, Greece",
      "object": "aegean2",
      "class": [
        "data.frame"
      ],
      "fields": [
        "a",
        "s"
      ],
      "rows": 173,
      "table": true,
      "tojson": true
    },
    {
      "name": "cole_sim",
      "title": "A simulated species-site abundance matrix with site areas",
      "object": "cole_sim",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "countryside",
      "title": "A sar_countryside dataset describing vascular plants in a multi-habitat landscape in Portugal",
      "object": "countryside",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Area_AG",
        "Area_SH",
        "Area_QF",
        "Spcs_AG",
        "Spcs_SH",
        "Spcs_QF",
        "Spcs_UB"
      ],
      "rows": 425,
      "table": true,
      "tojson": true
    },
    {
      "name": "galap",
      "title": "A SAR dataset describing the plants of the Galapagos Islands",
      "object": "galap",
      "class": [
        "data.frame"
      ],
      "fields": [
        "a",
        "s"
      ],
      "rows": 16,
      "table": true,
      "tojson": true
    },
    {
      "name": "habitat",
      "title": "A sar_habitat dataset describing snails on islands in the Aegean Sea, Greece",
      "object": "habitat",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Area",
        "Het",
        "Species"
      ],
      "rows": 12,
      "table": true,
      "tojson": true
    },
    {
      "name": "niering",
      "title": "A SAR dataset describing the plants of the Kapingamarangi Atoll",
      "object": "niering",
      "class": [
        "data.frame"
      ],
      "fields": [
        "a",
        "s"
      ],
      "rows": 32,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "sars-package",
      "title": "sars: Fit and compare species-area relationship models using multimodel inference",
      "topics": [
        "sars-package"
      ]
    },
    {
      "page": "aegean",
      "title": "A SAR dataset describing invertebrates on islands in the Aegean Sea, Greece",
      "topics": [
        "aegean"
      ]
    },
    {
      "page": "aegean2",
      "title": "A SAR dataset describing plants on islands in the Aegean Sea, Greece",
      "topics": [
        "aegean2"
      ]
    },
    {
      "page": "cole_sim",
      "title": "A simulated species-site abundance matrix with site areas",
      "topics": [
        "cole_sim"
      ]
    },
    {
      "page": "coleman",
      "title": "Fit Coleman's Random Placement Model",
      "topics": [
        "coleman"
      ]
    },
    {
      "page": "countryside",
      "title": "A sar_countryside dataset describing vascular plants in a multi-habitat landscape in Portugal",
      "topics": [
        "countryside"
      ]
    },
    {
      "page": "countryside_extrap",
      "title": "Use a sar_countryside() model object to predict richness",
      "topics": [
        "countryside_extrap"
      ]
    },
    {
      "page": "display_sars_models",
      "title": "Display the model information table",
      "topics": [
        "display_sars_models"
      ]
    },
    {
      "page": "galap",
      "title": "A SAR dataset describing the plants of the Galapagos Islands",
      "topics": [
        "galap"
      ]
    },
    {
      "page": "gdm",
      "title": "Fit the General Dynamic Model of Island Biogeography",
      "topics": [
        "gdm"
      ]
    },
    {
      "page": "get_coef",
      "title": "Calculate the intercepts and slopes of the different segments",
      "topics": [
        "get_coef"
      ]
    },
    {
      "page": "habitat",
      "title": "A sar_habitat dataset describing snails on islands in the Aegean Sea, Greece",
      "topics": [
        "habitat"
      ]
    },
    {
      "page": "lin_pow",
      "title": "Fit the log-log version of the power model",
      "topics": [
        "lin_pow"
      ]
    },
    {
      "page": "logLik.thresholdInt",
      "title": "Extract Log-Likelihood for the thresholdInt class",
      "topics": [
        "logLik.thresholdInt"
      ]
    },
    {
      "page": "niering",
      "title": "A SAR dataset describing the plants of the Kapingamarangi Atoll",
      "topics": [
        "niering"
      ]
    },
    {
      "page": "plot.coleman",
      "title": "Plot Model Fits for a 'coleman' Object",
      "topics": [
        "plot.coleman"
      ]
    },
    {
      "page": "plot.habitat",
      "title": "Plot Options For a 'habitat' Object",
      "topics": [
        "plot.habitat"
      ]
    },
    {
      "page": "plot.multi",
      "title": "Plot Model Fits for a 'multi' Object",
      "topics": [
        "plot.multi"
      ]
    },
    {
      "page": "plot.sars",
      "title": "Plot Model Fits for a 'sars' Object",
      "topics": [
        "plot.sars"
      ]
    },
    {
      "page": "plot.threshold",
      "title": "Plot Model Fits for a 'threshold' Object",
      "topics": [
        "plot.threshold"
      ]
    },
    {
      "page": "sar_asymp",
      "title": "Fit the Asymptotic regression model",
      "topics": [
        "sar_asymp"
      ]
    },
    {
      "page": "sar_average",
      "title": "Fit a multimodel averaged SAR curve",
      "topics": [
        "sar_average"
      ]
    },
    {
      "page": "sar_betap",
      "title": "Fit the Beta-P cumulative model",
      "topics": [
        "sar_betap"
      ]
    },
    {
      "page": "sar_chapman",
      "title": "Fit the Chapman Richards model",
      "topics": [
        "sar_chapman"
      ]
    },
    {
      "page": "sar_countryside",
      "title": "Fit the countryside SAR model",
      "topics": [
        "sar_countryside"
      ]
    },
    {
      "page": "sar_epm1",
      "title": "Fit the Extended Power model 1 model",
      "topics": [
        "sar_epm1"
      ]
    },
    {
      "page": "sar_epm2",
      "title": "Fit the Extended Power model 2 model",
      "topics": [
        "sar_epm2"
      ]
    },
    {
      "page": "sar_gompertz",
      "title": "Fit the Gompertz model",
      "topics": [
        "sar_gompertz"
      ]
    },
    {
      "page": "sar_habitat",
      "title": "Fit habitat SAR models",
      "topics": [
        "sar_habitat"
      ]
    },
    {
      "page": "sar_heleg",
      "title": "Fit the Heleg(Logistic) model",
      "topics": [
        "sar_heleg"
      ]
    },
    {
      "page": "sar_koba",
      "title": "Fit the Kobayashi model",
      "topics": [
        "sar_koba"
      ]
    },
    {
      "page": "sar_linear",
      "title": "Fit the linear model",
      "topics": [
        "sar_linear"
      ]
    },
    {
      "page": "sar_loga",
      "title": "Fit the Logarithmic model",
      "topics": [
        "sar_loga"
      ]
    },
    {
      "page": "sar_logistic",
      "title": "Fit the Logistic(Standard) model",
      "topics": [
        "sar_logistic"
      ]
    },
    {
      "page": "sar_mmf",
      "title": "Fit the MMF model",
      "topics": [
        "sar_mmf"
      ]
    },
    {
      "page": "sar_monod",
      "title": "Fit the Monod model",
      "topics": [
        "sar_monod"
      ]
    },
    {
      "page": "sar_multi",
      "title": "Create a Collection of SAR Model Fits",
      "topics": [
        "sar_multi"
      ]
    },
    {
      "page": "sar_negexpo",
      "title": "Fit the Negative exponential model",
      "topics": [
        "sar_negexpo"
      ]
    },
    {
      "page": "sar_p1",
      "title": "Fit the Persistence function 1 model",
      "topics": [
        "sar_p1"
      ]
    },
    {
      "page": "sar_p2",
      "title": "Fit the Persistence function 2 model",
      "topics": [
        "sar_p2"
      ]
    },
    {
      "page": "sar_power",
      "title": "Fit the Power model",
      "topics": [
        "sar_power"
      ]
    },
    {
      "page": "sar_powerR",
      "title": "Fit the PowerR model",
      "topics": [
        "sar_powerR"
      ]
    },
    {
      "page": "sar_pred",
      "title": "Use SAR model fits to predict richness on islands of a given size",
      "topics": [
        "sar_pred"
      ]
    },
    {
      "page": "sar_ratio",
      "title": "Fit the Rational function model",
      "topics": [
        "sar_ratio"
      ]
    },
    {
      "page": "sar_threshold",
      "title": "Fit threshold SAR models",
      "topics": [
        "sar_threshold"
      ]
    },
    {
      "page": "sar_weibull3",
      "title": "Fit the Cumulative Weibull 3 par. model",
      "topics": [
        "sar_weibull3"
      ]
    },
    {
      "page": "sar_weibull4",
      "title": "Fit the Cumulative Weibull 4 par. model",
      "topics": [
        "sar_weibull4"
      ]
    },
    {
      "page": "sars_models",
      "title": "Display the 21 SAR model names",
      "topics": [
        "sars_models"
      ]
    },
    {
      "page": "summary.sars",
      "title": "Summarising the results of the model fitting functions",
      "topics": [
        "summary.sars"
      ]
    },
    {
      "page": "threshold_ci",
      "title": "Calculate confidence intervals around breakpoints",
      "topics": [
        "threshold_ci"
      ]
    }
  ],
  "_readme": "https://github.com/txm676/sars/raw/HEAD/README.md",
  "_rundeps": [
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    "cli",
    "codetools",
    "crayon",
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    "nlme",
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    "Rcpp",
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    "VGAM",
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  "_vignettes": [
    {
      "source": "sars-r-package.Rmd",
      "filename": "sars-r-package.html",
      "title": "sars R Package",
      "author": "Thomas J. Matthews and Francois Guilhaumon",
      "engine": "knitr::rmarkdown",
      "headings": [
        "BACKGROUND",
        "METHODS AND FEATURES",
        "Model fit validation",
        "Observed model shape and identifying an asymptote",
        "Multimodel SAR curve",
        "Additional functions",
        "SAR extrapolation",
        "SAR thresholds",
        "Multi-habitat and countryside species–area relationship models",
        "Habitat-heterogeneity SAR models",
        "Countryside SAR models",
        "On the calculation of information criteria",
        "Potential issues with using information criteria in conjunction with",
        "non-linear regression models",
        "CONCLUSIONS",
        "References"
      ],
      "created": "2019-02-18 22:02:48",
      "modified": "2026-01-05 10:46:11",
      "commits": 25
    }
  ],
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